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- KOREAN
- E-ISSN2713-8615
- KCI
E-ISSN : 2713-8615
Vol.10 No.3
Abstract
To study the biodiversity of bacterial species, here we report indigenous prokaryotic species of Korea. A total of 23 bacterial strains affiliated to the class Alphaproteobacteria were isolated from various environmental sources including seaweeds, seawater, fresh water, wetland/marsh, tidal sediment, plant roots, sewage and soil. Considering higher than 98.8% 16S rRNA gene sequence similarities and formation of a well-defined phylogenetic clade with named species, it was confirmed that each strain belonged to the predefined bacterial species of the class Alphaproteobacteria. There is no official report of these 23 species in Korea; 20 species of 16 genera (Mameliella, Yangia, Paracoccus, Ruegeria, Loktanella, Phaeobacter, Dinoroseobacter, Tropicimonas, Lutimaribacter, Litoreibacter, Sulfitobacter, Roseivivax, Labrenzia, Hyphomonas, Maricaulis, Thalassospira) in the order Rhodobacterales and 3 species of a single genus (Brevundimonas) in the order Caulobacterales. Gram-staining, cell morphology, basic biochemical characteristics, isolation sources, optimum temperature, growth media, and strain IDs are detailed in the species description as well as Table 1.
Abstract
During an investigation of indigenous prokaryotic species in the Republic of Korea, a total of 38 bacterial strains belonging to the class Gammaproteobacteria were isolated from diverse environments. Samples were collected from soil, seawater, sand, sedimentary soil, rabbit feces, rat intestines, marine wetland, and tidal flats. The strains were identified to the species level using the high 16S rRNA gene sequences and showed high similarity (>98.7%) with the closest bacterial species and formed a robust clade in the neighbor-joining phylogenetic tree; it was determined that each strain belonged to independent, predefined bacteria species within the class Gammaproteobacteria. The 38 strains of Gammaproteobacteria analyzed in this study have not been reported in the Republic of Korea. Therefore, this study describes 20 genera of 13 families in 8 orders: Aeromonadales, Alteromonadales, Cellvibrionales, Enterobacterales, Lysobacterales, Oceanospirillales, Pseudomonadales, and Vibrionales. For each species, we describe Gram reaction, strain ID, isolation source, colony and cell morphology, cultural, physiological, and basic biochemical characteristics.
Abstract
During a project aiming to comprehensively investigate indigenous prokaryotic species in Korea, a total of 20 bacterial strains phylogenetically belonging to the the class Bacilli of the phylum Firmicutes were isolated from various environmental sources such as soil, air, tidal flat, sea water, grain, wetland, breast milk and healthy human urine. Phylogenetic analysis based on 16S rRNA gene sequences revealed that 20 bacterial strains showed the high sequence similarities (≥98.7%) to the closest type strains and formed robust phylogenetic clades with closely related species of validly published names in the class Bacilli of the phylum Firmicutes. In the present study, we report 20 species of 13 genera of seven families of two orders of one class in the phylum Firmicutes, which have not been previously reported in Korea. Morphological, biochemical, and physiological characteristics, isolation sources, and NIBR deposit numbers of these unrecorded bacterial species are described in the species descriptions.
Abstract
To obtain unrecorded freshwater bacterial species in Korea, water and sediment samples were collected from streams, lakes, and wetland of the Han River watershed in 2020. Approximately 800 bacterial strains were isolated on R2A agar after aerobic or anaerobic incubation, and identified using 16S rRNA gene sequences. A total of 28 strains, with ≥98.7% 16S rRNA gene sequence similarity with validly published bacterial species but not reported in Korea, were determined to be unrecorded bacterial species in Korea. The unrecorded bacterial strains were phylogenetically diverse and belonged to four phyla, eight classes, 13 orders, 19 families, and 25 genera. The unreported species were assigned to Acetobacter, Alsobacter, Mesorhizobium, Prosthecomicrobium, and Microvirga of the class Alphaproteobacteria; Vogesella, Formosimonas, Aquincola, Massilia, Acidovorax, and Brachymonas of the class Betaproteobacteria; Pseudoxanthomonas, Thermomonas, Lysobacter, Enterobacter, Kosakonia, and Acinetobacter of the class Gammaproteobacteria; Sulfuricurvum of the class Epsilonproteobacteria; Mycolicibacterium, Agromyces, Phycicoccus, and Microbacterium of the class Actinobacteria; Paenibacillus of the class Bacilli; Clostridium of the class Clostridia; and Flavobacterium of the class Flavobacteriia. The details of the unreported species, including Gram reaction, colony and cell morphology, biochemical characteristics, and phylogenetic position are also provided in the description of the strains.
Abstract
Tidal flats are well developed in and around the Yellow Sea of Northeast Asia, and benthic diatoms are the most important primary producers in corresponding habitats. In the present study, the taxonomy and distribution of small negligible diatom species from Northeast Asian tidal flats are investigated for better understanding of the diversity of Korean marine benthic diatoms. The presence of Plagiogrammopsis minima and Diploneis aestuarii, which may have been ignored and/or misidentified due to their small size, were identified by both means of light microscopy (LM) and scanning electron microscopy (SEM). Plagiogrammopsis minima has never been reported from Korea before the present study, while Diploneis aestuarii was only once mentioned without any photographic information. Accordingly, we provide the morphological characteristics of the two species in detail with LM and SEM observation. Information on the regional distribution of the two species is also provided. Results of the present study contribute to the better understanding of the biodiversity of the Korean marine benthic diatoms.
Abstract
Subalpine and alpine ecosystems are especially vulnerable to temperature increases. Betula ermanii Cham. (Betulaceae) is a dominant broad-leaved tree species in the subalpine zone and is designated as a ‘Climatesensitive Biological Indicator Species’ in South Korea. This study aimed to predict the potential distribution of B. ermanii under current and future climate conditions in South Korea using the MaxEnt model. The species distribution models showed an excellent fit (AUC=0.99). Among the climatic variables, the most critical factors shaping B. ermanii distribution were identified as the maximum temperature of warmest month (Bio5; 64.8%) and annual mean temperature (Bio1; 20.3%). Current potential habitats were predicted in the Baekdudaegan mountain range and Mt. Hallasan, and the area of suitable habitat was 1531.52 km2, covering 1.57% of the Korean Peninsula. With global warming, future climate scenarios have predicted a decrease in the suitable habitats for B. ermanii. Under RCP8.5-2070s, in particular, habitat with high potential was predicted only in several small areas in Gangwon-do, and the total area suitable for the species decreased by up to 97.3% compared to the current range. We conclude that the dominant factor affecting the distribution of B. ermanii is temperature and that future temperature rises will increase the vulnerability of this species.
Abstract
Sclerochilus Sars, 1866 is the most diverse genus of the family Bythocytheridae, one of the longest surviving groups of extant ostracods, and the oldest representative of the superfamily Cytheroidea. It has a worldwide distribution at various marine depths, and it includes three subgenera: Fascichilus Schornikov, 1981; Praesclerochilus Schornikov, 1981; and Sclerochilus Sars, 1866. We describe Sclerochilus (Praesclerochilus) jejuensis sp. nov. from Jeju Island, South Korea, raising the number of known Praesclerochilus species to 13. Although most species belonging to this subgenus have very similar carapace shape, the new species differs morphologically from its most similar congeners, S. (P.) mukaishimensis Okubo, 1977; S. (P.) pruniformis Schornikov, 1981; and S. (P.) ochotensis Schornikov, 1981, by the large ventral process on the hemipenis. So far, 29 Sclerochilus species have been reported from South Korea, only one of which was named, but for which no descriptive information was provided. Therefore, this is the first taxonomic report of a Sclerochilus species from South Korea.
Abstract
In this study, three lecanid rotifer species were newly recorded in Korea: Lecane inermis (Bryce, 1892), L. furcata (Murray, 1913), and L. nana (Murray, 1913). Most of the lecanid rotifers recorded in Korea have been collected from stagnant water, and Lecane furcata and L. nana were collected from a reservoir. In contrast, L. inermis was found in a soil sample. Lecane inermis is the first illoricated lecanid species reported in Korea. This species is distinguished from other illoricated species by its toes with relatively long claws. Lecane furcata is the most common lecanid rotifer in submerged vegetation. The morphological characteristics of its lorica are similar to many other lecanid rotifers, but it can be distinguished by its completely fused toes with a terminal fissure, an absence of antero-lateral spines, and the ratio of lorica/toe length. Lecane nana is most similar to L. tryphema Harring & Myers, 1926, but can be distinguished by the toe tips curved outwards. The three species in this study are considered to have a cosmopolitan distribution and have been recorded in many Asian countries. In this paper, we describe the morphological characteristics of the three lecanid species with trophi structures observed by scanning electron microscope.
Abstract
Two newly recorded carnivorous amphipod species, Anonyx gurjanovai Steele, 1986 and A. nugax (Phipps, 1774) belonging to the family Uristidae Hurley, 1963, were collected from the East Sea, Korea. Anonyx gurjanovai is included in the A. laticoxae group and is characterized by a concave palm of the propodus in gnathopod 1 and small posteroventral projection at epimeron 3. The other species, A. nugax, represents the A. nugax group and is distinguished from congeneric species based on the presence of a shorter and less acute projection on epimeron 3. There are 13 species of the A. nugax group recorded worldwide, but this is the first report on the presence of the A. nugax group in Korean waters. Previously, three species of the genus Anonyx had been reported in Korea, and through this study, we have added two newly recorded species. Both the newly recorded Anonyx species are illustrated and compared with the related species. A key to the Anonyx species in Korea is also provided.
Abstract
We performed a taxonomic study on Korean Pacificincolidae (Bryozoa: Cheilostomata) with the materials collected from 39 localities (ports, intertidal and subtidal zones) in the coastal seas of South Korea from 1981 to 2020. Korean Mucronella perforata reported by Rho and Seo (1985) turned out to be not Pacificincola perforata, but Primavelans glabricollaris n. sp. based on morphological data. Pacificincola perforata, which was transferred from Mucronella perforata (Okada and Mawatari, 1937), is also added to the Korean fauna. This study is the first to use mitochondrial 16S rRNA gene sequences to study the family Paficincolidae. The NJ analysis also reconfirmed the validity of the genus Primavelans, established on the basis of the early astogeny by De Blauwe in 2006, with the mitochondrial 16S rRNA sequences. The inter-genetic distance among two species belong to the Pacificincolidae was in the range of 13.39±1.83 mm. Primavelans glabricollaris n. sp. is thus distinguished from Pacificincola perforata with both morphological and molecular data. A new species, Primavelans glabricollaris, and a new record, Pacificincola perforata from Korea are herein described in detail and illustrated by scanning electron microscopy.
Abstract
Three new species of Myzomolgus are described as associates of sipunculans from a tidal flat in Phuket, Thailand. As diagnostic features, Myzomolgus leptocercosus n. sp. has elongate caudal rami which are 10.7 times longer than wide, 5 setae and a conical process on the first antennular segment, an armature formula 1, 0, 1+sucker, and 6 of antenna, and an inner coxal seta on all swimming legs. Myzomolgus spatulatus n. sp. lacks a rostrum, but bears 4 setae and a spatulate process on the first antennular segment, an armature formula 0, 0, 2+sucker, and 6 of the antenna, the inner coxal seta on legs 1-3, and 5 armture elements on the third endopodal segment of legs 1-3. Myzomolgus cucullatus n. sp. has short caudal rami which are 1.60 times longer than wide, a broad, hood-like tergite of fouth pedigerous somite, 4 setae only on the first antennular segment, the armature formula 0. 0. 2+sucker, and 6 of the antenna, and no iiner coxal seta on the swimming legs.
Abstract
During a field survey of indigenous Korean ciliates, we collected 21 unrecorded species from aquatic (freshwater and brackish water [salinity about 1.0‰] samples) and terrestrial (moss and soil samples) habitats. The morphology of these species was studied based on live observation, protargol, silver carbonate and silver nitrate impregnation, and scanning electron microscope. These species belong to seven classes as follows: 1) class Heterotrichea - Blepharisma seculum; 2) class Spirotrichea - Birojimia terricola, Bistichella variabilis, Deviata bacilliformis, Oxytricha paragranulifera, Parabistichella cf. variabilis, Steinia sphagnicola, Stichotricha aculeata, Stylonychia cf. notophora, and Tetmemena bifaria minima; 3) class Armophorea - Metopus es; 4) class Litostomatea - Acropisthium mutabile, Pseudomonilicaryon japonicum, and Rimaleptus alpinus; 5) class Phyllopharyngea - Podophrya bivacuolata; 6) class Nassophorea - Drepanomonas pauciciliata; and 7) class Oligohymenophorea - Dexiostoma campylum, Frontonia atra, Histiobalantium natans viridis, Opisthonecta minima, and Tetrahymena rostrata. Here, we provide a brief diagnosis and remark for each species