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- KOREAN
- E-ISSN2713-8615
- KCI
E-ISSN : 2713-8615
Vol.8 No.2
Abstract
During a comprehensive investigation of indigenous prokaryotic species in Korea, a total of 46 bacterial strains assigned to the classes Alphaproteobacteria, Betaproteobacteria, Deltaproteobacteria, and Epsilonproteobacteria were isolated from a diversity of habitats including freshwater, seawater, brackish water, ginseng soil, plant roots, natural caves, and tidal flats. Based on their high 16S rRNA gene sequence similarities (>98.7%) and formation of strongly-supported phylogenetic clades with the closest type species, each strain was assigned to an independent, predefined bacterial species. Since there were no published or official reports regarding the isolation of these 46 species in Korea, here we report them as new species to Korea: 34 species in 14 families in the five orders of Alphaproteobacteria, 10 species in five families in the three orders of Betaproteobacteria, one species of Deltaproteobacteria and one species of Epsilonproteobacteria. Gram reaction, colony and cell morphology, basic biochemical characteristics, isolation source, and strain IDs are described in the species description section.
Abstract
A total of 38 bacterial strains within the classes Bacilli and Deinococci were isolated from various sources in Korea. Samples were collected from animal intestine, urine, soil, tidal flat mud, and kimchi. In the sequence comparison and phylogenetic analysis of 16S rRNA sequences, the 38 isolates were assigned to the classes Bacilli and Deinococci with sequence similarities more than 98.7%. Twenty-four strains and 13 strains were classified the order Bacillales and Lactobacillales in the class Bacilli, respectively. In the order Bacillales, there were nine species in the genus Bacillus, seven species in the genus Paenibacillus, and the remaining eight species in the genera Domibacillus, Halobacillus, Virgibacillus, Lysinibacillus, Paenisporosarcina, Planococcus, Savagea, and Staphylococcus. In the order Lactobacillales, there were four species in the genus Lactobacillus, three species in the genus Leuconostoc, three species in the genus Lactococcus, and the remaining three species in the genera Aerococcus, Enterococcus, and Streptococcus. One species was related to the genus Deinococcus of the order Deinococcales. Most of the isolated strains were Gram-stain-positive, but some were Gram-stain-variable or Gram-stain-negative. Cells were rod or cocci-shaped. Based on the results of 16S rRNA analysis, we report 38 strains as previously unrecorded species to Korea, and the basic characteristics of strains are described herein.
Abstract
In 2015 and 2017, the National Institute of Biological Resources has isolated four unrecorded prokaryotic species designated as R-1-5, R-2-13, R-2-1, and R-1-8 from the peatland soil of Yongneup. Phylogenetic analysis based on 16S rRNA gene sequence similarity determined the four strains (R-1-5, R-2-13, R-2-1, R-1-8) were most closely related to Curvibacter lanceolatus (99.93%), Massilia brevitalea (98.7%), Pseudomonas lini (99.54%), and Pseudomonas vancouverensis (99.93%), respectively. The four unrecorded strains belong to the phylum Proteobacteria, in which the genera Curvibacter and Massilia are assigned to the class Betaproteobacteria, and the genus Pseudomonas to the class Gammaproteobacteria. Since there are no publications or official reports on these four strains, these four species are new records to Korea. The strains were further characterized by Gram reaction, colony and cell morphology, basic biochemical properties, and phylogenetic position. Descriptive information of the four unrecorded species is provided.
Abstract
The taxonomic hierarchy of the phylum Proteobacteria was assessed, after which the isolation and classification state of Proteobacteria species with valid names for Korean indigenous isolates were studied. The hierarchical taxonomic system of the phylum Proteobacteria began in 1809 when the genus Polyangium was first reported and has been generally adopted from 2001 based on the road map of Bergey’s Manual of Systematic Bacteriology. Until February 2018, the phylum Proteobacteria consisted of eight classes, 44 orders, 120 families, and more than 1,000 genera. Proteobacteria species isolated from various environments in Korea have been reported since 1999, and 644 species have been approved as of February 2018. In this study, all novel Proteobacteria species from Korean environments were affiliated with four classes, 25 orders, 65 families, and 261 genera. A total of 304 species belonged to the class Alphaproteobacteria, 257 species to the class Gammaproteobacteria, 82 species to the class Betaproteobacteria, and one species to the class Epsilonproteobacteria. The predominant orders were Rhodobacterales, Sphingomonadales, Burkholderiales, Lysobacterales and Alteromonadales. The most diverse and greatest number of novel Proteobacteria species were isolated from marine environments. Proteobacteria species were isolated from the whole territory of Korea, with especially large numbers from the regions of Chungnam/Daejeon, Gyeonggi/Seoul/Incheon, and Jeonnam/Gwangju. Most Halomonadaceae species isolated from Korean fermented foods and solar salterns were halophilic or halotolerant. Air-borne members of the genera Microvirga, Methylobacterium, and Massilia had common characteristics in terms of G+C content, major respiratory quinones, and major polar lipids.
Abstract
We describe three feather mites recovered from a wood sandpiper Tringa glareola that was stored in a - 20°C freezer at the Chungnam Wild Animal Rescue Center. These feather mites are reported for the first time in South Korea: Avenzoaria totani (Canestrini, 1978), Ingrassia veligera Oudemans, 1904 and Montchadskiana glareolae Dabert and Ehrnsberger, 1999. In this study, we provide morphological diagnoses and illustrations. Additionally, we provide partial sequences of the mitochondrial cytochrome c oxidase subunit I (COI) gene as molecular characteristics of three species.
Abstract
Two feather mites, Bychovskiata hypoleuci Mironov and Ddabert, 1997 and Phyllochaeta interifolia (Mégnin and Trouessart, 1884) are reported for the first time in South Korea. Specimens of these two species were collected from the common sandpiper Actitis hypoleucos. The genera Bychovskiata Dubinin, 1951 and Phyllochaeta Dubinin, 1951 are also new reports for South Korea. Here, we provide morphological descriptions and illustrations of these two species. Additionally, we provide partial sequences of the mitochondrial cytochrome c oxidase subunit I (COI) as DNA barcodes.
Abstract
Mites in the family Veigaiidae, order Mesostigmata, subclass Acari are widely distributed in subsoil habitats. They are mostly free-living and predaceous on small arthropod eggs and larvae, and prefer habitats with rich organic matters including litter and humus layers of forest soil. The genus Veigaia Oudemans, 1905 of the family Veigaiidae (Acari: Mesostigmata) is one of the ubiquitous genera from the Holarctic Region. Until now, only two genera and five species of the family were recorded from Korea. Here we provide a report of the species Veigaia tibbetsi Farrier, 1957 with detailed redescription. Even though V. tibbetsi had appeared in some ecological literature, this is the first record of this species in Republic of Korea. This species was mostly found from pine forest (Pinus densiflora) of northeastern mountainous parts of the Korean Peninsula, in Gangwon and Gyeongbuk Provinces. We provided some ecological characteristics of the family Veigaiidae, which will help to further exploration of acarine biodiversity.
Abstract
Mycophagous gall midges in the family Cecidomyiidae (Diptera) are poorly known in Korea, with only 14 recorded species. From our sampling throughout South Korea during 2015-2017, we present evidence of the Korean distribution of another 20 species as follows-Lestremiinae: Anarete angusta Mo & Xu, 2009; Micromyinae: Anodontoceras saigusai Yukawa, 1967, Campylomyza appendiculata Jaschhof, 2015, Campylomyza furva Edwards, 1938, Peromyia gotohi Jaschhof, 2001, Peromyia pumila Jaschhof, 2001, and Tekomyia populi Möhn, 1960; Winnertziinae: Leptosyna nervosa (Winnertz), 1852, Winnertzia nigripennis (Kieffer), 1894, and Winnertzia solidaginis Felt, 1907; Porricondylinae: Bryocrypta indubitata Mamaev, 1964, Camptomyia flavocinerea Panelius, 1965, Coccopsilis obscura (Mamaev), 1964, Coccopsilis paneliusi (Yukawa), 1971, Cryptoneurus muscicola (Kieffer), 1896, Dirhiza abludentis (Mamaev), 1998, Divellepidosis separata (Yukawa), 1971, Larimyia lavalis Fedotova & Sidorenko, 2007, Parvovirga latostylata Jaschhof, 2013, and Porricondyla nigripennis (Meigen), 1830.