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A report of 31 unrecorded bacterial species belonging to the class Alphaproteobacteria in Korea

Journal of Species Research / Journal of Species Research, (E)2713-8615
2017, v.6 no.2, pp.129-140
Kyung Hyun Kim
YOON, JUNG HOON
Seung Bum Kim
Kwang-Yeop Jahng
JANGCHEON CHO
Joh Ki Seong
Cha Chang Jun
Chi-Nam Seong
Bae Jin-Woo
Im Wan-Taek
Che Ok Jeon
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Abstract

During a comprehensive investigation of indigenous prokaryotic species in Korea, a total 31 bacterial strains assigned to the class Alphaproteobacteria were isolated from diverse environmental habitats including freshwater, seawater, brackish water, ginseng soil, plant roots, natural caves, and tidal flats. Based on their high 16S rRNA gene sequence similarities (>99.1%) and formation of robust phylogenetic clades with the closest type species, each strain was assigned to an independent and predefined bacterial species. Because there were no published or official reports regarding the isolation of these 31 species in Korea, this study identified three species in two genera in the order Caulobacterales, 12 species in 10 genera in the order Rhodobacterales, three species in two genera in the order Rhizobiales, two species in two genera in the order Rhodospirillales and 11 species in seven genera, all in the order Sphingomonadaceae within the Alphaproteobacteria are reported as new alphaproteobacterial species in Korea. Gram reaction, colony and cell morphology, basic biochemical characteristics, isolation source, and strain IDs are described in the species description section.

keywords
16S rRNA, Alphaproteobacteria, bacterial diversity, indigenous prokaryotic species in Korea, taxonomy, unrecorded species

Reference

1.

Ferla, M.P., J.C. Thrash, S.J. Giovannoni and W.M. Patrick. 2013. New rRNA gene-based phylogenies of the Alphaproteobacteria provide perspective on major groups, mitochondrial ancestry and phylogenetic instability. PLoS ONE 8:e83383

2.

Felsenstein, J. 2002. PHYLIP (phylogeny inference package), version 3.6a, Seattle: Department of genetics, University of Washington, Seattle, WA, USA.

3.

Fredricks, D.N. 2006. Introduction to the Rickettsiales and other intracellular prokaryotes. In The Prokaryotes: A handbook on the biology of Bacteria. 3rd edition edition. Edited by Dworkin M, Falkow S, Rosenberg E, Schleifer KH and Stackebrandt E. New York, Springer.

4.

Giovannoni, S.J., H.J. Tripp, S. Givan, M. Podar, K.L. Vergin, D. Baptista, L. Bibbs, J. Eads, T.H. Richardson, M. Noordewier, MS. Rappe, J.M. Short, J.C. Carrington and E.J. Mathur. 2005. Genome streamlining in a cosmopolitan oceanic bacterium. Science 309:1242-1245.

5.

Kaneko, T., Y. Nakamura, S. Sato, K. Minamisawa, T. Uchiumi, S. Sasamoto, A. Watanabe, K. Idesawa, M. Iriguchi, K. Kawashima, M. Kohara, M. Matsumoto, S. Shimpo, H. Tsuruoka, T. Wada, M. Yamada and S. Tabata. 2002. Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. DNA Ressearch 9:189-197.

6.

Kaneko, T., Y. Nakamura, S. Sato, E. Asamizu, T. Kato, S. Sasamoto, A. Watanabe, K. Idesawa, A. Ishikawa, K. Kawashima, T. Kimura, Y. Kishida, C. Kiyokawa, M. Kohara, M. Matsumoto, A. Matsuno, Y. Mochizuki, S. Nakayama, N. Nakazaki, S. Shimpo, M. Sugimoto, C. Takeuchi, M. Yamada and S. Tabata. 2000. Complete genome structure of the nitrogen-fixing symbiotic bacterium Mesorhizobium loti. DNA Ressearch 7:331-338.

7.

Kim, O.S., Y.J. Cho, K. Lee, S.H. Yoon, M. Kim, H. Na, S.C. Park, Y.S. Jeon, J.H. Lee, H. Yi, S. Won and J. Chun. 2012. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. International Journal of Systematic and Evolutionary Microbiology 62:716-721.

8.

Kimura, M. 1983. The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press, Cambridge, New York.

9.

Lee, H.J., S.E. Jeong, M.-S. Cho, S.H. Kim, S.-S. Lee, B.- H. Lee and C.O. Jeon. 2014. Flavihumibacter solisilvae sp. nov., isolated from forest soil. International Journal of Systematic and Evolutionary Microbiology 64:2897-2901.

10.

Matteo, P., J. Ferla, T. Cameron, J. Stephen and M. Wayne. Patrick. 2013. New rRNA Gene-Based Phylogenies of the Alphaproteobacteria provide perspective on major Groups, mitochondrial ancestry and mhylogenetic Instability. PLoS One 8(12): e83383.

11.

Saitou, N. and M. Nei. 1987. The neighbor-joining method:a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4:406-425.

12.

Skorpil, P. and W.J. Broughton. 2006. Molecular interactions between Rhizobium and legumes. Progress Mololcular Subcell Biolology 41:143-164.

13.

Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin and D.G. Higgins. 1997. The Clustal_X windows interface:flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25:4876-4882.

Journal of Species Research