E-ISSN : 2713-8615
As a result of the research project ‘Survey and excavation of Korean indigenous species’ to secure unrecorded species in Korea, a total of 14 unreported bacterial strains assigned to the phyla Deinococcus- Thermus and Bacteroidetes were isolated from various environmental habitats all around Korea. On the basis of 16S rRNA gene sequence similarity and affiliation to the clade with the closest species, it was concluded that the isolates represent deep groups of the phyla Deinococcus-Thermus and Bacteroidetes. There have been no records about these 14 unreported species in Korea; therefore 2 species of 2 genera in the class Deinococci within the phylum Deinococcus-Thermus, and 11 species of 9 genera in the class Flavobacteriia and one species in one genus in the class Sphigobacteriia within the phylum Bacteroidetes are described as unreported species found in Korea. Gram staining reaction, morphological and other biochemical characteristics are described in the species description section.
Asker, D., T.S. Awad, T. Beppu and K. Ueda. 2009. Deinococcus aquiradiocola sp. nov., isolated from a radioactive site in Japan. Int. J. Syst. Evol. Microbiol. 59:144-149.
Fitch, W.M. 1971. Toward defining course of evolution -Minimum change for a specific tree topology. Syst. Zool. 20:406-416.
Griffiths, E. and R.S. Gupta. 2007. Identification of signature proteins that are distinctive of the Deinococcus-Thermus phylum. International Microbiology: the Official Journal of the Spanish Society for Microbiology 10:201-208.
Johansen, J.E., P. Nielsen and C. Sjoholm. 1999. Description of Cellulophaga baltica gen. nov., sp. nov. and Cellulophaga fucicola gen. nov., sp. nov. and reclassification of Cytophaga lytica to Cellulophaga lytica gen. nov., comb. nov. Int. J. Syst. Bacteriol. 49(3):1231-1240.
Kim, J.J., E. Kanaya, H.Y. Weon, Y. Koga, K. Takano, P.F. Dunfield, S.W. Kwon and S. Kanaya. 2012a. Flavobac terium compostarboris sp. nov., isolated from leaf-andbranch compost, and emended descriptions of Flavobacterium hercynium, Flavobacterium resistens and Flavobacterium johnsoniae. Int. J. Syst. Evol. Microbiol. 62:2018-2024.
Kim, O.S., Y.J. Cho, K. Lee, S.H. Yoon, M. Kim, H. Na, S.C. Park, Y.S. Jeon, J.H. Lee, H. Yi, S. Won and J. Chun. 2012b. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62:716-721.
Kim, Y.O., S. Park, B.H. Nam, Y.T. Jung, D.G. Kim, K.S. Bae and J.H. Yoon. 2014. Description of Lutimonas halocynthiae sp. nov., isolated from a golden sea squirt (Halocynthia aurantium), reclassification of Aestuariicola saemankumensis as Lutimonas saemankumensis comb. nov. and emended description of the genus Lutimonas. Int. J. Syst. Evol. Microbiol. 64:1984-1990.
Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide-sequences. J. Mol. Evol. 16:111-120.
Kopel, M., W. Helbert, B. Henrissat, T. Doniger and E. Banin. 2014. Draft genome sequence of Nonlabens ulvanivorans, an ulvan-degrading bacterium. Genome announc. 2(4):e00793-14.
Krieg, N., J. Staley, D. Brown, B. Hedlund, B. Paster, N. Ward, W. Ludwig and W. Whitman. 2010. Bergey’s manual of systematic bacteriology, 2nd edn, vol. 4 (The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacters, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes): Springer, New York.
Ludwig, W., J. Euzéby and W.B. Whitman. 2010. Road map of the phyla Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes. In Bergey’s Manual of Systematic Bacteriology pp. 1-19:Springer.
Luo, X.S., Z. Wang, J. Dai, L. Zhang, J. Li, Y.L. Tang, Y. Wang and C.X. Fang. 2010. Pedobacter glucosidilyticus sp nov., isolated from dry riverbed soil. Int. J. Syst. Evol. Microbiol. 60:229-233.
Nedashkovskaya, O.I., S.B. Kim and V.V. Mikhailov. 2010. Maribacter stanieri sp. nov., a marine bacterium of the family Flavobacteriaceae. Int. J. Syst. Evol. Microbiol. 60:214-218.
Nedashkovskaya, O.I., L.A. Balabanova, N.V. Zhukova, S.J. Kim, I.Y. Bakunina and S.K. Rhee. 2014. Flavobacterium ahnfeltiae sp. nov., a new marine polysaccharide-degrading bacterium isolated from a Pacific red alga. Archives of Microbiology 196:745-752.
Nedashkovskaya, O.I., M. Suzuki, M. Vancanneyt, I. Cleenwerck, A.M. Lysenko, V.V. Mikhailov and J. Swings. 2004. Zobellia amurskyensis sp. nov., Zobellia laminariae sp. nov. and Zobellia russellii sp. nov., novel marine bacteria of the family Flavobacteriaceae. Int. J. Syst. Evol. Microbiol. 54:1643-1648.
Nedashkovskaya, O.I., S.B. Kim, A.M. Lysenko, G.M. Frolova, V.V. Mikhailov, K.S. Bae, D.H. Lee and I.S. Kim. 2005. Gramella echinicola gen. nov., sp. nov., a novel halophilic bacterium of the family Flavobacteriaceae isolated from the sea urchin Strongylocentrotus intermedius. Int. J. Syst. Evol. Microbiol. 55:391-394.
Qin, Q.L., X.Y. Zhang, X.M. Wang, G.M. Liu, X.L. Chen, B.B. Xie, H.Y. Dang, B.C. Zhou, J. Yu and Y.Z. Zhang. 2010. The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation. BMC Genomics 11:247.
Rainey, F.A., M.F. Nobre, P. Schumann, E. Stackebrandt and M.S. daCosta. 1997. Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison. Int. J. Syst. Bacteriol. 47:510-514.
Saitou, N. and M. Nei. 1987. The Neighbor-Joining Method - a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
Srinivasan, S., J.J. Lee, S. Lim, M. Joe and M.K. Kim. 2012. Deinococcus humi sp. nov., isolated from soil. Int. J. Syst. Evol. Microbiol. 62:2844-2850.
Tamaki, H., S. Hanada, Y. Kamagata, K. Nakamura, N. Nomura, K. Nakano and M. Matsumura. 2003. Flavobacterium limicola sp. nov., a psychrophilic, organic-polymerdegrading bacterium isolated from freshwater sediments. Int. J. Syst. Evol. Microbiol. 53:519-526.
Tamura, K., D. Peterson, N. Peterson, G. Stecher, M. Nei and S. Kumar. 2011. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739.
Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin and D.G. Higgins. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
Whitman, W.B., D.C. Coleman and W.J. Wiebe. 1998. Prokaryotes: the unseen majority. Proceedings of the National Academy of Sciences of the United States of America 95:6578-6583.
Yoon, B.J., D.H. Lee, B.J. Kang, H.Y. Kahng, Y.S. Oh, J.H. Sohn, E.S. Choi and D.C. Oh. 2010. Hyunsoonleella jejuensis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from seawater. Int. J. Syst. Evol. Microbiol. 60:382-386.