- KOREAN
- E-ISSN2713-8615
- KCI
E-ISSN : 2713-8615
Report on 24 unrecorded bacterial species of Korea belonging to the phylum Firmicutes
Yochan Joung (Chungnam National University)
Tae-Su Kim (Chungnam National University)
Jin-Woo Bae (Kyung Hee University)
CHANG-JUN CHA (Chung-Ang University)
JONGSIK CHUN
Wan-Taek Im (Hankyong National Univeristy)
Kwang-Yeop Jahng (Chonbuk National University)
Che Ok Jeon (Chung-Ang University)
KISEONG JOH (Hankuk University of Foreign Studies)
Jung-Hoon Yoon (Sungkyunkwan University)
Abstract
As an outcome of the study on the bacterial species diversity in Korea, we report 24 unrecorded bacterial species of Korea belonging to the phylum Firmicutes. The unrecorded species excavated through this study were assigned to 12 different genera of 7 families, namely Bacillus, Halobacillus, Lysinibacillus and Thalassobacillus of Bacillaceae, Brevibacillus and Paenibacillus of Paenibacillaceae, Viridibacillus of Planococcaceae, Salinicoccus and Staphylococcus of Staphylococcaceae, Enterococcus of Enterococcaceae, Lactobacillus of Lactobacillaceae, and Lactococcus of Streptococcaceae, respectively. The bacterial isolates were obtained from various ecosystems in Korea. The isolates were identified based on 16S rRNA gene sequences, and those exhibiting at least 99% sequence similarity with known bacterial species but never reported in Korea were selected as unrecorded species. The selected isolates were subjected to further taxonomic characterization including the analysis of cell shape and fine structure using electron microscope, colony color and shapes, enzyme activities and carbon source utilization. The descriptive information on the 24 unrecorded species are provided.
- keywords
- Bacillales, Firmicutes, Lactobacillales, unrecorded bacterial species
Reference
Aizawa, T., M. Urai, N. Iwabuchi, M. Nakajima and M. Sunairi. 2010. Bacillus trypoxylicola sp. nov., xylanase-producing alkaliphilic bacteria isolated from the guts of Japanese horned beetle larvae (Trypoxylus dichotomus septentrionalis). Int. J. Syst. Evol. Microbiol. 60:61-66.
De Vos, P., G.M. Garrity, D. Jones, N.R. Krieg, W. Ludwig, F.A. Rainey, K.-H. Schleifer and W.B. Whitman (editors). 2009. Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 3, The Firmicutes. New York: Springer.
Dworkin, M., S. Falkow, E. Rosenberg, K.-H. Schleifer and E. Stackebrandt (editors). 2006. The Prokaryotes, 3rd edn, vol. 3. New York: Springer.
Felsenstein, J. 1981. Evolutionary trees from DNA sequences:a maximum likelihood approach. J. Mol. Evol. 17:368-376.
Killer, J., S. Dubná, I. Sedláček and P. Švec. 2014. Lactobacillus apis sp. nov., from the stomach of honeybees (Apis mellifera), having an in vitro inhibitory effect on the causative agents of American and European foulbrood. Int. J. Syst. Evol. Microbiol. 64:152-157.
Kim, J.Y., N.R. Shin, H.K. Na, D.W. Hyun, T.W. Whon, P.S. Kim, J.H. Yun and J.W. Bae. 2013. Enterococcus diestrammenae sp. nov., isolated from the gut of Diestrammena coreana. Int. J. Syst. Evol. Microbiol. 63:4540-4545.
Kim, O.S., Y.J. Cho, K. Lee, S.H. Yoon, M. Kim, H. Na, S.C. Park, Y.S. Jeon, J.H. Lee, H. Yi, S. Won and J. Chun. 2012. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62:716-721.
Kluge, A.G. and J.S. Farris. 1969. Quantitative phyletics and the evolution of anurans. Syst. Zool. 18:1-32.
König, H. 2006. Bacillus species in the intestine of termites and other soil invertebrates. J. Appl. Microbiol. 101:620-627.
Kuhnigk, T., E.M. Borst, A. Breunig, H. König, M.D. Collins, R.A. Hutson and P. Kämpfer. 1995. Bacillus oleronius sp. nov., a member of the hindgut flora of the termite Reticulitermes santonensis (Feytaud). Can. J. Microbiol. 41:699-706.
Ley, R.E., D.A. Peterson and J.I. Gordon. 2006. Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124:837-848.
McSpadden Gardner, B.B. 2004. Ecology of Bacillus and Paenibacillus spp. in agricultural systems. Phytopathology 94:1251-1258.
Saitou, N. and M. Nei. 1987. The neighbor-joining method:a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
Spring, S. 2009. Genus IX. Halobacillus Spring, Ludwig, Márquez, Ventosa and Schleifer 1996, 495VP. In Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 3, The Firmicutes, pp. 164-168. Edited by De Vos, P., Garrity, G., Jones, D., Krieg, N. R., Ludwig, W., Rainey, F. A., Schleifer, K.-H., and Whitman, W. B. New York: Springer.
Tamura, K., G. Stecher, D. Peterson, A. Filipski and S. Kumar. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30:2725-2729.
Tannock, G. (editor) 2005. Probiotics and Prebiotics: Scientific Aspects (1st ed.). Caister Academic Press.
Ventosa, A. 2009. Genus IV. Salinicoccus Ventosa, Márquez, Ruiz-Berraquerro and Kocur 1990b, 320VP (Effective publication: Ventosa, Márquez, Ruiz-Berraquerro and Kocur 1990a, 32). In Bergey’s Manual of Systematic Bacteriology, 2nd edn, vol. 3, The Firmicutes, pp. 426-429. Edited by De Vos, P., Garrity, G., Jones, D., Krieg, N. R., Ludwig, W., Rainey, F. A., Schleifer, K.-H., and Whitman, W. B. New York: Springer.
- Downloaded
- Viewed
- 0KCI Citations
- 0WOS Citations