Chloroplast genome of white wild chrysanthemum, Dendranthema sp. K247003, as genetic barcode
Soo-Jin Kwon (National Academy of Agricultural Science)
Jihye Park (Green Plant Institute)
이민지 (주식회사녹색식물연구소)
So-Youn Won (National Academy of Agricultural Science)
김영철 (Gangneung-Wonju National University)
황윤정 (삼육대학교)
Seong-Han Sohn (National Academy of Agricultural Science)
이정호 (주식회사녹색식물연구소)
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Abstract
Dendranthema boreale and D. indicum are easily distinguished from other Korean Dendranthema spp. by having yellow flowers. We have found a putative new taxon of Dendranthema having white flowers, except for sharing most characters with Dendranthema boreale. The chloroplast (cp) genome of the putative new taxon of Dendranthema, Dendranthema sp. K247003, registered in National Agro-Biodiversity Center (ABC), was completely characterized as a genetic barcode. The cp-genome of Dendranthema sp. K247003 was 151,175-bp in size: LSC was 82,886-bp, IR 24,971-bp, SSC 18,347-bp. The cp-genome of Dendranthema sp. K247003 contains 113 genes and 21 introns consisted of 79 protein coding genes, 4 RNA genes, and 30 tRNA genes, with 20 group II introns and one group I intron. Some of the genes and there introns were duplicated in IR. The cp-DNA of Dendranthema sp. K247003 is distinguished from that of D. boreale IT121002 by 67 SNPs in genic regions of 24 protein coding genes and by a 9-bp INDEL in ycf1. Further cp-DNA study will give us better information on genetic markers of Dendranthema species.
- keywords
- Asteraceae, chloroplast genome, Compositae, Dendranthema, INDEL, SNP
참고문헌
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