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E-ISSN : 2713-8615

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Vol.4 No.2
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A report of 29 unrecorded bacterial species in Korea, belonging to the Alphaproteobacteria

Journal of Species Research / Journal of Species Research, (E)2713-8615
2015, v.4 no.2, pp.97-108
https://doi.org/10.12651/JSR.2015.4.2.097
Qingmei Liu (Hankyong National University)

Jang-Cheon Cho (Inha University)
Jung-Hoon Yoon (Sungkyunkwan University)
Kiseong Joh (Hankuk University of Foreign Studies)
CHANG-JUN CHA (Chung-Ang University)
Jongsik Chun (Seoul National University)
(Sunchon National University)
Jin-Woo Bae (Kyung Hee University)
Kwang-Yeop Jahng (Chonbuk National University)
Che Ok Jeon (Chung-Ang University)
Wan-Taek Im (Hankyong National Univeristy)
Qingmei, L. , Jang-Cheon, C. , Jung-Hoon, Y. , Kiseong, J. , CHANG-JUN, C. , Jongsik, C. , Jin-Woo, B. , Kwang-Yeop, J. , Che, O. J. , & Wan-Taek, I. (2015). A report of 29 unrecorded bacterial species in Korea, belonging to the Alphaproteobacteria. Journal of Species Research, 4(2), 97-108, https://doi.org/10.12651/JSR.2015.4.2.097
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Abstract

assigned to the classes Alphaproteobacteria were isolated from various environmental samples collected from plant root, ginseng soil, forest soil, marsh, mud flat, freshwater and seawater. From the high 16S rRNA gene sequence similarity (>99.1%) and formation of a robust phylogenetic clade with the closest species, it was determined that each strain belonged to each independent and predefined bacterial species. There is no official report that these 29 species included in Alphaproteobacteria is have been described in Korea; therefore 14 species of 9 genera in the order Rhizobiales, 7 species of 6 genera in the order Sphingomonadales and 4 species of 2 genera in the order Caulobacterales and 3 species in the order Rhodobacterales and 1 species in the order Rhodospirillales found in Korea. Gram reaction, colony and cell morphology, basic biochemical characteristics, isolation source, and strain IDs are also described in the species description section.

keywords
16S rRNA, Alphaproteobacteria, bacterial diversity, unrecorded species

Reference

1.

Bazylinski, D.A., T.J. Williams, C.T. Lefèvre, R.J. Berg, C.L. Zhang, S.S. Bowser, A.J. Dean and T.J. Beveridge. 2012. Magnetococcus marinus gen. nov., sp. nov., a marine, magnetotactic bacterium that represents a novel lineage (Magnetococcaceae fam. nov.; Magnetococcales ord. nov.) at the base of the Alphaproteobacteria. International Journal of Systematic and Evolutionary Microbiology 63:801-808.

2.

Chilton, M.D., M.H. Drummond, D.J. Merio, D. Sciaky, A.L. Montoya, M.P. Gordon and E.W. Nester. 1977. Stable incorporation of plasmid DNA into higher plant cells: the molecular basis of crown gall tumorigenesis. Cell. Jun;11(2):263-271.

3.

Felsenstein, J. 1985. Confidence limit on phylogenies: an approach using the bootstrap. Evolution 39:783-791.

4.

Fitch, W.M. 1971. Toward defining the course of evolution:minimum change for a specific tree topology. Syst. Zool. 20:406-416.

5.

Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41:95-98.

6.

Kim, O.S., Y.J. Cho, K. Lee, S.H. Yoon, M. Kim, H. Na, S.C. Park, Y.S. Jeon, J.H. Lee, H. Yi, S. Won and J. Chun. 2012. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. International Journal of Systematic and Evolutionary Microbiology 62(3):716-721.

7.

Kimura, M. 1983. The Neutral Theory of Molecular Evolution. Cambridge: Cambridge University Press, Cambridge, New York.

8.

Matteo, P., J. Ferla, T. Cameron, J. Stephen and M. Wayne. Patrick 2013. New rRNA Gene-Based Phylogenies of the Alphaproteobacteria provide perspective on major Groups, mitochondrial ancestry and mhylogenetic Instability. PLoS One 8(12): e83383.

9.

Oren, A. and G.M. Garrity. 2014. Then and now: a systematic review of the systematics of prokaryotes in the last 80years. Antonie van Leeuwenhoek 106(1):43-56.

10.

Parte, A.C. 2014. LPSN--list of prokaryotic names with standing in nomenclature. Nucleic Acids Research 42(Database issue):D613-616.

11.

Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4(4):406-425.

12.

Tamura, K., D. Peterson, N. Peterson, G. Stecher, M. Nei and S. Kumar. 2011. MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Mol. Biol. Evol. 28(10): 2731-2739.

13.

Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin and D.G. Higgins. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 25:4876-4882.

14.

Williams, K.P., B.W. Sobral and A.W. Dickerman. 2007. A robust species tree for the Alphaproteobacteria. Journal of Bacteriology 189(13): 4578-4586.

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