A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria
정요찬 (인하대학교)
남기균 (인하대학교)
장광엽 (전북대학교)
김승범 (충남대학교)
조기성 (한국외국어대학교)
차창준 (중앙대학교)
성치남 (순천대학교)
배진우 (경희대학교)
임완택 (한경대학교)
조장천 (인하대학교)
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Abstract
In 2014, as a subset study to discover indigenous prokaryotic species in Korea, a total of 33 bacterial strains assigned to the class Gammaproteobacteria were isolated from diverse environmental samples collected from soil, tidal flat, freshwater, seawater, oil-contaminated soil, and guts of animal. From the high 16S rRNA gene sequence similarity (>98.5%) and formation of a robust phylogenetic clade with the closest species, it was determined that each strain belonged to each independent and predefined bacterial species. There is no official report that these 33 species have been described in Korea; therefore, 1 strain of the Aeromonadales, 6 strains of the Alteromonadales, 3 strains of the Chromatiales, 5 strains of the Enterobacteriales, 4 strains of the Oceanospirillales, 11 strains of the Pseudomonadales, and 3 strains of the Xanthomonadales within the Gammaproteobacteria are described for unreported bacterial species in Korea. Gram reaction, colony and cell morphology, basic biochemical characteristics, and isolation sources are also described in the species description section.
- keywords
- 16S rRNA, bacterial diversity, Gammaproteobacteria, unreported species
참고문헌
Cho, J.C. and S.J. Giovannoni. 2004. Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria. Appl. Environ. Microbiol. 70:432-440.
Du, Z., D. Zhang, S. Liu, J. Chen, X. Tian, Z. Zhang, H. Liu and G. Chen. 2009. Gilvimarinus chinensis gen. nov., sp. nov., an agar-digesting marine bacterium within the class Gammaproteobacteria isolated from coastal seawater in Qingdao, China. Int. J. Syst. Evol. Microbiol. 59:2987-2990.
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
Garrity, G., D. Brenner, N. Krieg and J. Staley. 2005. Bergey’s Manual of Sytematic Bacteriology. Volume 2 (The Proteobacteria), part B (The Gammaproteobacteria). New York: Springer.
Giovannoni, S.J., E.F. DeLong, T.M. Schmidt and N.R. Pace. 1990. Tangential flow filtration and preliminary phylogenetic analysis of marine picoplankton. Appl. Environ. Microbiol. 56:2572-2575.
Jeon, Y., K. Lee, S. Park, B. Kim, Y. Cho, S. Ha and J. Chun. 2014. EzEditor: a versatile sequence alignment editor for both rRNA -and protein-coding genes. Int. J. Syst. Evol. Microbiol. 64:689-691.
Keller-Costa, T., A. Jousset, L. van Overbeek, J.D. van Elsas and R. Costa. 2014. The freshwater sponge Ephydatia fluviatilis harbours diverse Pseudomonas species (Gammaproteobacteria, Pseudomonadales) with broad-spectrum antimicrobial activity. PLoS One 9: e88429.
Kersters, K., P. De Vos, M. Gillis, J. Swings, P. Vandamme and E. Stackebrandt. 2006. Introduction to the Proteobacteria. In The prokaryotes, pp. 3-37. Springer.
Kim, A., S. Lee, K. Han and T. Ahn. 2012a. Arenimonas aquaticum sp. nov., a member of the Gammaproteobacterium, isolated from a freshwater reservoir. Int. J. Syst. Evol. Microbiol. 50:354-358.
Kim, O., Y. Cho, K. Lee, S. Yoon, M. Kim, H. Na, S. Park, Y.S. Jeon, J.H. Lee, H. Yi, S. Won and J. Chun. 2012b. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62:716-721.
Parte, A.C. 2014. LPSN-list of prokaryotic names with standing in nomenclature. Nucleic Acids Res. 42:D613-6.
Saitou, N. and M. Nei. 1987. The neighbor-joining method:a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
Tamura, K., G. Stecher, D. Peterson, A. Filipski and S. Kumar. 2013. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol. Biol. Evol. 30:2725-2729.
Wang, Y., H.F. Sheng, Y. He, J.Y. Wu, Y.X. Jiang, N.F. Tam, and H.W. Zhou. 2012. Comparison of the levels of bacterial diversity in freshwater, intertidal wetland, and marine sediments by using millions of illumina tags. Appl. Environ. Microbiol. 78:8264-8271.
Williams, K.P., J.J. Gillespie, B.W. Sobral, E.K. Nordberg, E.E. Snyder, J.M. Shallom and A.W. Dickerman. 2010. Phylogeny of Gammaproteobacteria. J. Bacteriol. 192:2305-2314.
Yan, S., M. Yu, Y. Wang, C. Shen and X. Zhang. 2011. Catenovulum agarivorans gen. nov., sp. nov., a peritrichously flagellated, chain-forming, agar-hydrolysing gammaproteobacterium from seawater. Int. J. Syst. Evol. Microbiol. 61:2866-2873.
Zhang, J., X. Zhang, Y. Liu, S. Xie and Y. Liu. 2014. Bacterioplankton communities in a high-altitude freshwater wetland. Ann. Microbiol. 64:1405-1411.
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