- KOREAN
- E-ISSN2713-8615
- KCI
E-ISSN : 2713-8615
A report of eight unrecorded radiation resistant bacterial species in Korea isolated in 2018
Myung Kyum Kim
Srinivasan Sathiyaraj
JinWoo Lee
kim juyoung
Soohyun Maeng
Ki-Eun Lee
Eun-Young Lee
Myung-Suk Kang
Gayathri Sathiyaraj (Seoul Women’s University)
Abstract
Eight bacterial strains assigned to the phylum Firmicutes were isolated from the soil samples in Korea. Phylogenetic analysis based on 16S rRNA gene sequences showed that strains 18JY14-16, 18JY14-35, 18JY42-5, 18JY12-20, 18JY35-8, 18JY76-9, 18JY39-1 and 18JY54-12 were most closely related to Paenibacillus lupini (MH497638; 99.4%), Paenibacillus illinoisensis (MH497643; 99.8%), Paenibacillus tundrae (MH497658; 99.7%), Paenibacillus selenitireducens (MH497639; 99.4%), Paenibacillus eucommiae (MH497640; 99.9%), Paenibacillus vini (MH497654; 99.4%), Paenibacillus gorillae (MH497647; 99.5%), and Paenibacillus macquariensis (MH497649; 99.9%) respectively. These Paenibacillus species were Gramstain-positive, rod-shaped and radiation resistant bacteria. This is the first report of these nine bacterial species in Korea.
- keywords
- 16S rRNA, bacterial diversity, unreported species, Paenibacillus, Firmicutes
Reference
Ash, C., F.G. Priest and M.D. Collins. 1994. Paenibacillus gen. nov. and Paenibacillus polymyxa comb. nov. In Validation of the Publication of New Names and New Combinations Previously Effectively Published Outside the IJSB, List no. 51. International Journal of Systemic Bacteriology 44:852.
Cao, Y., F. Chen, Y. Li, S. Wei and G. Wang. 2015. Paenibacillus ferrarius sp. nov., isolated from iron mineral soil. International Journalof Systematic and Evolutionary Microbiology 65:165-170.
Carro, L., J.D. Flores-Felix, E. Cerda-Castillo, M.H. Ramirez-Bahena, J.M. Igual, C. Tejedor, E. Velazquez and A. Peix. 2013. Paenibacillus endophyticus sp. nov., isolated from nodules of Cicer arietinum. International Journal of Systematicand Evolutionary Microbiology 63:4433-4438.
Chen, W.M., S. Laevens, T.M. Lee, T. Coenye, P. De Vos, M. Mergeay and P. Vandamme. 2001. Ralstonia taiwanensis sp. nov., isolated from root nodules of mimosa species and sputum of a cystic fibrosis patient. International Journal of Systematic and Evolutionary Microbiology 51:1729-1735.
Doetsch, R. 1981. Determinative methods of light microscopy. Manual of methods for general bacteriology: 21-33.
Dsouza, M., M.W. Taylor, J. Ryan, A. MacKenzie, K. Lagutin, R.-F. Anderson, S.-J. Turner and J. Aislabie. 2014. Paenibacillus darwinianus sp. nov., isolated from gamma-irradiated Antarctic soil. International Journal of Systematic and Evolutionary Microbiology 64:1406-1411.
Edgar, R.C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
Glaeser, S.P., E. Falsen, H.-J. Busse and P. Kampfer. 2013. Paenibacillus vulneris sp. nov., isolated from a necrotic wound. International Journal of Systematic and Evolutionary Microbiology 63:777-782.
Grady E.N, J. Macdonald, L. Liu, A. Richman and Z.C. Yuan, Current knowledge and perspectives of Paenibacillus: a review. Microbial Cell Factory 15:203.
Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. In: Nucleic acids symposium series, vol. 41, pp. 95-98 London: Information Retrieval Ltd., c1979-c2000.
Im, S., D. Song, M. Joe, D. Kim, D.H. Park and S. Lim. 2013 Comparative survival analysis of 12 histidine kinase mutants of Deinococcus radiodurans after exposure to DNA-damaging agents. Bioprocess and Biosystems Engineering 36:781-789.
Jiang, B., X. Zhao, J. Liu, L. Fu, C.Yang and X. Hu. 2015. Paenibacillus shenyangensis sp. nov., a bioflocculantproducing species isolated from soil under a peach tree. International Journal of Systematic and Evolutionary Microbiology 65:220-224.
Jin, H.J., J. Lv and S.F. Chen. 2011. Paenibacillus sophorae sp. nov., a nitrogen-fixing species isolated from the rhizosphere of Sophora japonica. International Journal of Systematic and Evolutionary Microbiology 61:767-771.
Kampfer, P., N. Lodders, B. Huber, E. Falsen and H.J. Busse. 2008. Deinococcus aquatilis sp. nov., isolated from water. International Journal of Systematic and Evolutionary Microbiology 58:2803-2806.
Kimura, M. 1983. The neutral theory of molecular evolution. Cambridge University Press.
Kittiwongwattana, C. and C. Thawai. 2015. Paenibacillus lemnae sp. nov., an endophytic bacterium of duckweed (Lemna aequinoctialis). International Journal of Systematic and Evolutionary Microbiology 65:107-112.
Liu, Y., L. Liu, F. Qiu, P. Schumann, Y. Shi, Y. Zou, X. Zhang and W. Song. 2010. Paenibacillus hunanensis sp. nov., isolated from rice seeds. International Journal of Systematic and Evolutionary Microbiology 60:1266-1270.
Ludwig, W., K.H. Schleifer and W.B. Whitman. 2009. Revised road map to the phylum Firmicutes. In: De Vos, P., G.M. Garrity, D. Jones, N.R. Krieg, W. Ludwig, F.A. Rainey, K.-H. Schleifer and W.B. Whitman (ed.), Bergey's Manual of Systematic Bacteriology 2nd ed.,vol. 3, pp. 1-14. New York: Springer.
Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4:406-425.
Selvam, K., J.R. Duncan, M. Tanaka and J.R. Battista. 2013. DdrA, DdrD, and PprA: components of UV and mitomycin C resistance in Deinococcus radiodurans R1. PLoS One 8 (7):e69007.
Shida, O., H. Takagi, K. Kadowaki, L.K. Nakamura and K. Komagata. 1997b. Emended description of Paenibacillus amylolyticus and description of Paenibacillus illinoisensis sp. nov. and Paenibacillus chibensis sp. nov. International Journal of Systematic and Evolutionary Microbiology 47:299-306.
Siddiqi, M.Z., M.H. Siddiqi, W.T. Im, Y.-J. Kim and D.-C. Yang. 2015. Paenibacillus kyungheensis sp. nov., isolated from flowers of magnolia. International Journal of Systematic and Evolutionary Microbiology 65:3959-3964.
Tamura, K., D. Peterson, N. Peterson, G. Stecher, M. Nei and S. Kumar. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods Molecular Biology and Evolution 28:2731-2739.
Tang, Q.Y., N. Yang, J. Wang, Y.Q. Xie, B. Ren, Y.G. Zhou, M.Y. Gu, J. Mao, W.J. Li, Y.H. Shi and L.X. Zhang. 2011. Paenibacillus algorifonticola sp. nov., isolated from a cold spring. International Journal of Systematic and Evolutionary Microbiology 61:2167-2172.
Wang, L., S.H. Baek, Y. Cui, H.G. Lee and S.T. Lee. 2012. Paenibacillus sediminis sp. nov., a xylanolytic bacterium isolated from a tidal flat. International Journal of Systematic and Evolutionary Microbiology 62:1284-1288.
Weisburg, W.G., S.M. Barns, D.A. Pelletier and D.J. Lane 1991. 16S ribosomal DNA.
Wragg, P., L. Randall and A.M. Whatmore. 2014. Comparison of Biolog GEN III MicroStation semi-automated bacterial identification system with matrix-assisted laser desorption ionization-time of flightmass spectrometry and 16S ribosomal RNA gene sequencing for the identification of bacteria of veterinary interest. Journal of Microbiological Methods 105:16-21.
- Downloaded
- Viewed
- 0KCI Citations
- 0WOS Citations