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ACOMS+ 및 학술지 리포지터리 설명회

  • 한국과학기술정보연구원(KISTI) 서울분원 대회의실(별관 3층)
  • 2024년 07월 03일(수) 13:30
 

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Database of National Species List of Korea: the taxonomical systematics platform for managing scientific names of Korean native species

Journal of Species Research / Journal of Species Research, (E)2713-8615
2020, v.9 no.3, pp.233-246
박종선 (InfoBoss Inc. and InfoBoss Research Center)
안정현 (국립생물자원관 국가생물다양성센터)
김용성 (InfoBoss Inc. and InfoBoss Research Center)
Donghyun Kim (InfoBoss Inc.)
양병국 (국립생물자원관)
김태호 (국립생물자원관)

Abstract

A scientific name is one of changeable terms in biology whenever additional research results of specific taxa is accumulated. The Database of the National Species List of Korea (DBNKo) was developed to manage taxonomic information of Korean species, designed to describe the changeable and complex taxonomical structure and information. A Korean Taxonomical Serial Number (KTSN) was assigned to each taxon, different from the normally used systems that the scientific name was considered as primary key to manage higher rank of taxa systematically. Common names were also treated with the KTSN, reflecting that common name is considered as one type of taxon. Additional taxonomic information (e.g., synonyms, original names, and references) was also added to the database. A web interface with an intuitive dashboard presenting taxonomic hierarchical structure is provided to experts and/or managers of the DBNKo. Currently, several biological databases are available in the National Institute of Biological Resources (NIBR) such as a specimen database, a digital library, a genetic information system, and the shared species data based on the DBNKo. The DBNKo started sharing species information with other institutions such as the Nakdonggang National Institute of Biological Resources. It is an ideal centralized species database to manage standardized information of Korean species.

keywords
centralized species database, Database of National Species List of Korea, DBNKo, Korean Taxonomical Serial Number, KTSN, web interface

참고문헌

1.

Aellen, P. 1930. Die wolladventiven Chenopodien Europas.

2.

Chase, M.W., M. Christenhusz, M. Fay, J. Byng, W.S. Judd, D. Soltis, D. Mabberley, A. Sennikov, P.S. Soltis and P.F. Stevens. 2016. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV. Botanical Journal of the Linnean Society 181(1):1-20.

3.

Chen, Y. and Z. Yang. 2018. Characterization of the complete plastome of Dysphania botrys, a candidate plant for cancer treatment. Mitochondrial DNA Part B 3(2):1214-1215.

4.

Chung, Y., C. Lee, W. Paik, J. Ahn and A. Park. 2001. Taxonomical investigation of the goosefoot (Genus Chenopodium;Chenopodiaceae) in Korea on a basis of external morphological characters. Kor J Weed Sci. 21:229-235.

5.

Cronquist, A. 1965. The status of the general system of classification of flowering plants. Annals of the Missouri Botanical Garden 52(3):281-303.

6.

Ereshefsky, M. 1997. The evolution of the Linnaean hierarchy. Biology and Philosophy 12(4):493-519.

7.

Federhen, S. 2011. The NCBI taxonomy database. Nucleic Acids Research 40(D1):D136-D143.

8.

Froese R, Pauly D. 2009. FishBase.

9.

Garten, B.B. 1886. Führer durch den Königlich botanischen Garten der Universität zu Breslau. JU Kerns Verlag (Max Müller).

10.

Griffiths, G.C. 1976. The future of Linnaean nomenclature. Systematic Zoology 25(2):168-173.

11.

Hernández-Ledesma, P., W.G. Berendsohn, T. Borsch, S. Von Mering, H. Akhani, S. Arias, I. Castañeda-Noa, U. Eggli, R. Eriksson and H. Flores-Olvera. 2015. A taxonomic backbone for the global synthesis of species diversity in the angiosperm order Caryophyllales. Willdenowia. pp. 281-383.

12.

Hong, Y., Y. Luo, Q. Gao, C. Ren, Q. Yuan and Q.-E. Yang. 2017. Phylogeny and reclassification of Aconitum subgenus Lycoctonum (Ranunculaceae). PLoS One. 12(1).

13.

Ipni. 2015. The international plant names index. The Royal Botanic Gardens Kew.

14.

Kalwij, J.M. 2012. Review of ‘The Plant List, a working list of all plant species’. Journal of Vegetation Science 23(5):998-1002.

15.

Kim, Y., J. Park and Y. Chung. 2019a. Comparative Analysis of Chloroplast Genome of Dysphania ambrosioides (L.) Mosyakin & Clemants Understanding Phylogenetic Relationship in Genus Dysphania R. Br. Korean J. Plant Res. 32(6):644-668.

16.

Kim, Y., Y. Chung and J. Park. 2019b. The complete chloroplast genome sequence of Dysphania pumilio (R. Br.)Mosyakin & Clemants(Amaranthaceae). Mitochondrial DNA Part B 4(1):403-404.

17.

Kim, Y., Y. Chung and J. Park. 2020. The complete chloroplast genome of Oxybasis glauca (L.) S. Fuentes, Uotila & Borsch(Amaranthaceae) as the first chloroplast genome in genus Oxybasis. Mitochondrial DNA Part B 5(2):1410-1412.

18.

Linnaeus, C. 1753. Binomial nomenclature and hierarchical classification system. Species Plantarum.

19.

NatureServe, F. 2008. NatureServe Explorer: an online encyclopedia of life. NatureServe Arlington, Virginia.

20.

Park, J. and Y. Kim. 2019. The second complete chloroplast genome of Dysphania pumilio (R. Br.) mosyakin &clemants(Amranthaceae): intraspecies variation of invasive weeds. Mitochondrial DNA Part B 4(1):1428-1429.

21.

Roskov, Y., T. Kunze, L. Paglinawan, T. Orrell, D. Nicolson, A. Culham, N. Bailly, P. Kirk, T. Bourgoin and G. Baillargeon. 2013. Species 2000 & ITIS Catalogue of Life, 2013 Annual Checklist.

22.

Secretariat, G. 2013. GBIF Backbone Taxonomy. Global Biodiversity Information Facility, http://www gbif org/species/2879175.

23.

Stearn, W.T. 1959. The background of Linnaeus’s contributions to the nomenclature and methods of systematic biology. Systematic Zoology 8(1):4-22.

24.

Sun, P.L., C.Y. Ku and D.H. Shih. 2015. An implementation framework for E-Government 2.0. Telematics and Informatics 32(3):504-520.

25.

Wilson, H.D., S.C. Barber and T. Walters. 1983. Loss of duplicate gene expression in tetraploid Chenopodium. Biochemical Systematics and Ecology 11(1):7-13.

26.

Wilson, E.O. 2003. The encyclopedia of life. Trends in Ecology & Evolution 18(2):77-80.

Journal of Species Research