Report of 39 unrecorded bacterial species in Korea belonging to Gammaproteobacteria
김승범 (충남대학교)
윤보람 (충남대학교)
배진우 (경희대학교)
차창준 (중앙대학교)
조장천 (인하대학교)
임완택 (한경대학교)
장광엽 (전북대학교)
전체옥 (중앙대학교)
조기성 (한국외국어대학교)
박지선 (충남대학교)
김원용 (중앙대학교)
이순동 (제주대학교)
성치남 (순천대학교)
이하나 (고려대학교)
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Abstract
During a series of extensive surveys of prokaryotic species diversity in Korea, bacterial strains belonging to Gammaproteobacteria were isolated from various sources of aquatic and terrestrial environments. A total of 39 isolates were obtained, which represented 39 unrecorded species in Korea belonging to 20 genera in 12 families. Enterobacteriaceae was the largest family, as eight species were assigned, which was followed by Moraxellaceae (6 species) and Pseudomonadaceae (5 species). At the genus level, Marinobacter (6 species), and Pseudomonas (5 species) were the main genera, and at least two species were obtained for Acinetobacter (3 species), Psychrobacter (3 species), Shewanella (2 species), Dickeya (2 species), Salinivibrio (2 species), Vibrio (2 species) and Rhodanobacter (2 species). The detailed description of each unrecorded species is provided.
- keywords
- 16S rRNA, Enterobacteriaceae, Gammaproteobacteria, Marinobacter, unrecorded species
참고문헌
Brenner, D.J., N.R. Krieg., J.T. Staley and G.M. Garrity. 2005. Bergey's Manual of Systematic Bacteriology, second edition, vol. 2 (The Proteobacteria), part B (The Gammaprotoebacteria), Springer, New York.
Choi, A., J.-W. Bae, C.-J. Cha, J. Chun, W.-T. Im, K.Y. Jahng, C.O. Jeon, K. Joh, S.B. Kim, C.N. Seong, J.-H. Yoon and J.-C. Cho. 2015. A report of 39 unrecorded bacterial species in Korea, belonging to the Betaproteobacteria and Gammaproteobacteria. J. Species Res. 4(2):109-126
Euzeby, J.P. 2017. List of Prokaryotic Names with Standing in Nomenclature, as of August 2017 (www.bacterio.net).
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
Jeon, Y.S., K. Lee, S.C. Park, B.S. Kim, Y.J. Cho, S.M. Ha and J. Chun. 2014. EzEditor: a versatile sequence alignment editor for both rRNA- and protein-coding genes. Int. J. Syst. Evol. Microbiol. 64:689-691.
Jukes, T. and C. Cantor. 1969. Evolution of protein molecules. In 'Mammalian Protein Metabolism' (Munro, H.N. ed.). pp. 21-132. Academic Press: New York.
Jung, Y.T., J.W. Bae, C.O. Jeon, K. Joh, C.N. Seong, K.Y. Jahng, J.C. Cho, C.J. Cha, W.T. Im, S.B. Kim and J.H. Yoon. 2016. A report of 31 unrecorded bacterial species in South Korea belonging to the class Gammaproteobacteria. J. Species Res. 5(1):188-200.
Kim, H., J.Y. Kang, J. Choi, J.U. Choe, S. Lee, T.U. Kim, H.N. Yi, K.Y. Jahng, J.C. Cho, H.H. Lee, K. Kim, S.B. Kim, J. Chun and K. Joh. 2011. Novel taxa belonging to the class Alphaproteobacteria, and Gammaproteobacteria, isolated from the Sumunmulbengdui Wetland Area of Jeju Island. Kor. J. Environ. Biol. 29(3):144-153.
Kim, O.S., Y.J. Cho, K. Lee, S.H. Yoon, M. Kim, H. Na, S.C. Park, Y.S. Jeon, J.H. Lee, H. Yi, S. Won and J. Chun. 2012. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62(3):716-721.
Kumar, S., G. Stecher and K. Tamura. 2016. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol. Biol. Evol. 33:1870-1874.
Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
Um, Y., Y. Joung, G.G. Nam, K.Y. Jahng, S.B. Kim, K. Joh, C.J. Cha, C.N. Seong, J.W. Bae, W.T. Im and J.C. Cho. 2016. A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria. J. Species Res. 5(2):241-253.
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