open access
메뉴ISSN : 1225-3480
Clithon retropictum (family Neritidae) is an aquatic gastropod mollusk that mainly inhabits freshwater. Owing to considerable decreases in its occurrence and natural habitat, and unique ecological characteristics, it has been legally protected as an endangered species in South Korea. In this study, we analyzed the complete mitochondrial genome sequence of C. retropictum and reconstructed phylogenetic trees inferred from the sequences of protein-coding and cytochrome c oxidase 1 (cox1) genes. The phylogenetic tree accurately reflected its morphological taxonomy at the generic level. Inferred from the trees, the occurrence of Clithon species in freshwater has been interpreted as an independent evolutionary event derived from its marine snail ancestor.
Arquez, M., Colgan, D. and Castro, L.R. (2014) Sequence and comparison of mitochondrial genomes in the genus Nerita (Gastropoda: Neritimorpha: Neritidae)and phylogenetic considerations among gastropods. Mar. Genom., 15: 45-54.
Asahida, T., Kobayashi, T., Saitoh, K. and Nakayama, I. (1996) Tissue preservation and total DNA extraction from fish stored at ambient temperature using buffers containing high concentration of urea. Fish. Sci., 62: 727-730.
Boore, J.L. (1999) Animal mitochondrial genomes. Nucleic Acids Res., 27: 1767-1780.
Castresana, J. (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol., 17: 540-552.
Castro, L.R. and Colgan, D.J. (2010) The phylogenetic position of Neritimorpha based on the mitochondrial genome of Nerita melanotragus (Mollusca:Gastropoda). Mol. Phylogenet. Evol., 57: 918-923.
Darriba, D., Taboada, G.L., Doallo, R. and Posada, D. (2012) jModelTest 2: more models, new heuristics and parallel computing. Nat. Method., 9: 772.
Eichhorst T.E. (2016). Neritidae of the world. Volume 1. Harxheim: Conchbooks. 695 pp.
Frey, M. and Vermeij, G. (2008) Molecular phylogenies and historical biogeography of a circumtropical group of gastropods (Genus: Nerita): implications for regional diversity patterns in the marine tropics. Mol. Phylogenet. Evol., 48: 1067-1086.
Fukumori, H., Itoh, H. and Kano, Y. (2016) The complete mitochondrial genome of the stream snail Clithon retropictus (Neritimorpha; Neritidae). Mitochond. DNA B, 1: 820-821.
Furojo, Y. and Tomiyama, K. (2000) Distribution and microhabitat of coexisting two freshwater snail species, Semisulcospira libertine (Gould, Prosobranchia: Pleuroceridae) and Clithon retropictus (Martens, Prosobranchia: Neritidae). Jpn. J. Malacol., 59: 245-260.
Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser., 41:95-98.
Kano, Y., Chiba, S. and Kase, T. (2002) Major adaptive radiation in neritopsine gastropods estimated from 28S rRNA sequences and fossil records. Proc. R. Soc. Biol. Sci. Ser. B, 269: 2457-2465.
Kwon, O.G., Min, D.-K., Lee, J.-R., Lee, J.-S., Je, J.-G. and Choe, B.-L. (2001) Korean mollusks with color illustrations. 332 pp. Hangul Graphics, Busan. (in Korean)
NIBR (National Institute of Biological Resources) (2014)Korean red list of threatened species. 2nd ed., Jisungsa, Seoul.
Lowe, T.M. and Eddy, S.R. (1997) tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res., 25:955-964.
Miyajima, H. and Wada, K. (2014) Spatial distribution in relation to life history in the neritid gastropod Clithon retropictus in the Kanzaki River Estuary, Osaka, Japan. Plankton Benth. Res., 9: 207-216.
Noseworthy, R.G., Mondol, M.R., Ju, S.-J. and Choi, K.-S. (2012) The occurrence of Clithon retropictus (von Martens in Kobelt, 1879, Gastropoda: Neritidae)in Jeju Island, Republic of Korea. Korean J. Malacol., 28: 81-90.
Page, R.D.M. (1996) TREEVIEW: An application to display phylogenetic trees on personal computers. Com. Appl. Biosci., 12: 357-358.
Quintero-Galvis, J. and Castro, L.R. (2013) Molecular phylogeny of the Neritidae (Gastropoda:Neritimorpha) based on the mitochondrial genes cytochrome oxidase I (COI) and 16S rRNA. Acta Biol. Colomb., 18: 307-318.
Ronquist, F. and Huelsenbeck, J.P. (2003) MRBAYES 3:Bayesian phylogenetic inference under mixed models. Bioinformatics, 19: 1572-1574.
Sambrook, J. and Russell, D.W. (2001) Molecular cloning: a laboratory manual. 3rd ed., Cold Spring Harbor Laboratory Press, New York.
Shigemiya, Y. and Kato, M. (2001) Age distribution, growth, and lifetime copulation frequency of a freshwater snail, Clithon retropictus (Neritidae). Popul. Ecol., 43: 133-140.
Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22: 2688-2690.
Stamatakis, A., Hoover, P. and Rougemont, J. (2008) A rapid bootstrap algorithm for the RAxML web servers. Syst. Biol., 57: 758-771.
Uribe, J.E., Colgan, D., Castro, L.R., Kano, Y. and Zardoya, R. (2016). Phylogenetic relationships among superfamilies of Neritimorpha (Mollusca: Gastropoda). Mol. Phylogenet. Evol., 104: 21-31.