바로가기메뉴

본문 바로가기 주메뉴 바로가기

ACOMS+ 및 학술지 리포지터리 설명회

  • 한국과학기술정보연구원(KISTI) 서울분원 대회의실(별관 3층)
  • 2024년 07월 03일(수) 13:30
 

logo

메뉴

동남아시아 4개국 두족류의 분류 및 계통분류학적 연구

Classification and phylogenetic studies of cephalopods in four countries in Southeast Asia

Abstract

In this study, we performed morphological identification and phylogenetic analysis in domestic distribution samples and direct collected samples in order to exactly identification for possible or currently imported cephalopod from the Southeast Asian countries (Thailand, Indonesia, Vietnam and China). We collected samples at august 2015 in Thailand Hat Yai, Songkhla, Indonesia Medan, Vietnam Ho Chi Minh and Vung Tau. But China, we collected samples at middle of September due to closed season. A total 23 species of cephalopods were identified three order four family nine genus 23 species which is 1 family 3 genus 9 species in Octopoda, 1 family 2 genus 8 species in Sepiolioda, 2 family 4 genus 6 species in Teuthoidea. The 18 species were conducted phylogenetic analysis using cytochrome oxidase I (COI) which is well-known as molecular phylogenetic marker, except the 5 species by sequencing results showed severe variation or sequencing unsuccessful. The results of 18 cephalopods COI phylogenetic analysis were consistent with morphological identification. The excluded 5 species should be need further studies as re-analysis and detailed analysis.

keywords
Cephalopod, Classification, Phylogenetic study, COI

참고문헌

1.

Altschul, S.F., Gish, W., Miller, W., Meyers, E.W., and Lipman, D.J. (1990) Basic Local Alignment Search Tool. Journal of Molecular Biology, 215: 403-410.

2.

Bergman, A. M. Phylogeography of Sepioteuthis lessoniana (the bigfin reef squid) and Uroteuthis duvauceli (the Indian squid). Honors Theses, Southern Illinois University, Carbondale, United States of America (2013).

3.

Bonnaud L., Saihi A. and Boucher-Rodoni R. (2002) Are 28S Rdna And 18S Rdna Informative For Cephalopod Phylogeny? Bulletin Of Marine Science, 71(1):197-208

4.

Braid, H.E., McBride, P.D., Bolstad, K.S.R. (2014)Molecular phylogenetic analysis of the squid family Mastigoteuthidae (Mollusca, Cephalopoda) based on three mitochondrial genes. Hydrobiologia, 725:145-164.

5.

Cheng R., Zheng X., Ma Y., Li Q. (2013) The complete mitochondrial genomes of two octopods Cistopus chinensis and Cistopus taiwanicus: revealing the phylogenetic position of the genus Cistopus within the order Octopoda. PLoS One, 8: e84216.

6.

Cheng, R., Yang, J., Lin, X., Zheng, X., Li, Q. (2012). "Determination of the complete mitochondrial DNA sequence of Octopus minor." Mol. Biol. Rep., 39(4):3461-3470.

7.

Ewing, B., and Green, P. (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res., 8: 186-194.

8.

Ewing, B., Hillier, L., Wendl, M.C., and Green, P. (1998)Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res., 8: 175-185.

9.

Furuya H. (2006) Three new species of dicyemid mesozoans (phylum Dicyemida) from Amphioctopus fangsiao (Mollusca: Cephalopoda), with comments on the occurrence patterns of dicyemids. Zoolog. Sci., 23: 105-119.

10.

Guo B., Wang W., Qi P., Wu C., Chen Y., Lv Z. (2016)Complete mitochondrial genome of the needle cuttlefish Sepia aculeata (Sepioidea, Sepiidae). Mitochondrial DNA, 27: 67-68.

11.

Hebert, P.D., Ratnasingham, S., and deWaard, J.R. (2003)Barcoding animal life: cytochrome c oxidase subunit 1divergences among closely related species. Proc. Biol. Sci., 270 Suppl 1: S96-99.

12.

Higgins, D.G., and Sharp, P.M. (1988) CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene, 73: 237-244.

13.

Hsiao C., Shen K.N., Ching T.Y., Wang Y.H., Ye J.J., Tsai S.Y., Wu S.C., Chen C.H., Wang C.H. (2015)The complete mitochondrial genome of the cryptic "lineage A" big-fin reef squid, Sepioteuthis lessoniana (Cephalopoda: Loliginidae) in Indo-West Pacific. Mitochondrial DNA: 1-2.

14.

Huang, X., and Madan, A. (1999) CAP3: A DNA sequence assembly program. Genome Res., 9:868-877.

15.

Jereb, P. & Roper, C.F.E. (2005) Cephalopods of the World. An annotated and Illustrated Catalogue of Cephalopod Species Known to Date. Volume 1Chambered Nautiluses and Sepioida. Food and Agriculture Organization of the United Nations Rome. pp. 1-262, pls. i-ix.

16.

Jereb, P. & Roper, C.F.E. (2010) Cephalopods of the World. An annotated and Illustrated Catalogue of Cephalopod Species Known to Date. Volume 2Myopsid and Oegopsid Squids. Food and Agriculture Organization of the United Nations Rome. pp. 1-605, pls. i-x.

17.

Jereb, P., Roper, C.F.E., Norman, M.D. & Finn, J.K. (2014) Cephalopods of the World. An annotated and Illustrated Catalogue of Cephalopod Species Known to Date. Volume 2 Octopods and Vampire Squids. Food and Agriculture Organization of the United Nations Rome. pp. 1-352, pls. i-xi.

18.

Kang J.H., Kim Y.K., Park J.Y., An C.M., Jun J.C. (2012)Development of microsatellite markers to genetically differentiate populations of Octopus minor from Korea and China. Mol. Biol. Rep., 39: 8277-8286.

19.

kang, S.W., Hwang, H.J., Park, S.Y., Wang, T.H., Park, E.B., Lee, T.H., Hwang, U.W., Lee, J.-S., Park, H.S., Han, Y.S., Lim, C.E., Kim, S., and Lee, Y.S. (2014)Mollusks Sequence Database: Version II. Korean Journal of Malacology, 30: 429-431.

20.

Kang, S.W., Park, S.Y., Patnaik, B.B., Hwang, H.J., Kim, C., Kim, S., Lee, J.S., Han, Y.S., and Lee, Y.S. (2015) Construction of PANM Database (Protostome DB) for rapid annotation of NGS data in Mollusks. Korean Journal of Malacology, 31: 243-247.

21.

Kawashima Y., Nishihara H., Akasaki T., Nikaido M., Tsuchiya K., Segawa S., Okada N. (2013) The complete mitochondrial genomes of deep-sea squid (Bathyteuthis abyssicola), bob-tail squid (Semirossia patagonica) and four giant cuttlefish (Sepia apama, S. latimanus, S. lycidas and S. pharaonis), and their application to the phylogenetic analysis of Decapodiformes. Mol. Phylogenet Evol., 69: 980-993.

22.

Tamura, K., Stecher, G., Peterson, D., Filipski, A., and Kumar, S. (2013) MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Molecular Biology and Evolution, 30: 2725-2729.

23.

Lee, Y.S., Jo, Y.-H., Kim, D.-S., Kim, D.-W., Kim, M.-Y., Choi, S.-H., Yon, J.-O., Byun, I.-S., Kang, B.-R., Jeong, K.-H., and Park, H.-S. (2004) Construction of BLAST Server for Mollusks. Korean Journal of Malacology, 20: 165-169.

24.

Lindgren A.R., Pankey M.S., Hochberg F.G., Oakley T.H. (2012) A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment. BMC Evolutionary Biology, 12: 129.

25.

Norman, M.D. & Lu, C.C. (2000) Preliminary Checklist of the Cephalopods the South China Sea. The Raffles Bulletin of Zoology, Supplement No. 8: 539-567.

26.

Norman, M.D. (2000) Cephalopods; A world Guide. Frankfurt, Germany, IKAN Publishing. pp. 1-320.

27.

Okutani, T. (1995) Cuttlefish and Squids of the World in Color. Publication for the 30th Anniversary of the Foundation of National Cooperative Association of Squid Processors. pp. 1-185. [in Japanese and English].

28.

Okutani, T. (2000) Marine Mollusks in Japan. Tokai Univ., Press. Tokyo. (Ed.). pp. 1-1172. [in Japanese and English].

29.

Okutani, T. (2005) Past, Present and Future Studies on Cephalopod Diversity in Tropical West Pacific. Phuket Marine biological Center Research Bulletin, 66:39-50.

30.

Okutani, T., Tagawa, M., Horikawa H. & Fish, M. (1987)Cephalopods from Continental Shelf and Slope around Japan. Japan Fisheries Resource Conservation Association. pp.1-194. [in Japanese and English].

31.

Shen K.N., Yen T.C., Chen C.H., Ye J.J., Hsiao C.D. (2014) The complete mitochondrial genome of the cryptic "lineage B" big-fin reef squid, Sepioteuthis lessoniana (Cephalopoda: Loliginidae) in Indo-West Pacific. Mitochondrial DNA: 1-2.

32.

Speiser D.I., Pankey M., Zaharoff A.K., Battelle B.A., Bracken-Grissom H.D., Breinholt J.W., Bybee, S.M., Cronin, T.W., Garm, A., Lindgren, A.R., Patel, N.H., Porter, M.L., Protas, M.E., Rivera, A.S., Serb, J.M., Zigler, K.S., Crandall, K.A., Oakley, T.H. (2014)Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. BMC Bioinformatics, 15:350.

33.

Sreeja, V., Bijukumar, A. & Norman, M.D. (2012) First report of Amphioctopus neglectus (Nateewathana &Norman, 1999) and A. rex (Nateewathana & Norman, 1999) (Mollusca: Cephalopoda) from the Indian coast. Molluscan Research, 32(1): 43-49.

34.

Wang W., Guo B., Li J., Qi P., Wu C. (2014) Complete mitochondrial genome of the common cuttlefish Sepia pharaonis (Sepioidea, Sepiidae). Mitochondrial DNA, 25: 198-199.

35.

Wang W., Guo B., Li J., Wang H., Qi P., Lv Z., Wu C. (2015) Complete mitochondrial genome of the spineless cuttlefish Sepiella inermis (Sepioidea, Sepiidae). Mitochondrial DNA, 26: 151-152.

36.

Yang J.M., Sun G.H., Zheng X.D., Ren L.H., Wang W.J., Li G.R., Sun B.C. (2015) Genetic differentiation of Octopus minor (Mollusca, Cephalopoda) off the northern coast of China as revealed by amplified fragment length polymorphisms. Genet. Mol. Res., 14:15616-15623.

37.

Zhang X, Zheng X, Ma Y, Li Q (2015) Complete mitochondrial genome and phylogenetic relationship analyses of Amphioctopus aegina (Gray, 1849)(Cephalopoda: Octopodidae). Mitochondrial DNA, :1-2.

logo